Here's a great list of parameters that you can use in command prompt to install only the parts you want and not subsequent unwanted features. For example if you want the .NET framework package but not any of its related features in command prompt you would type:
servermanagercmd -install NET-Framework-CoreThe list provided in the website below is from Windows Server 2008 but all the commands listed work in R2 as well. The website just puts the roles and commands into user-friendly columns so you get a better idea of what to install and what not to install.
http://blogs.techrepublic.com.com/datacenter/?p=294I would imagine if you wanted to strip out IIS in your .NET framework 3.5 features you are going to have to do an uninstall of the features, followed by a command-line install using the parameters i listed in
bold above.